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Pathomx is a workflow-based data analysis tool built on IPython. It began as a metabolomic-analysis toolkit, but has extended to support general data analysis workflows. It aims to be simple to use for non-experts while powerful enough for complex analysis...

Wooey is a simple web interface to run command line Python scripts. Think of it as an easy way to get your scripts up on the web for routine data analysis, file processing, or anything else. The project was inspired by how simply and powerfully sandman...

Another season has passed; the leaves are dropping from the trees in the northern hemisphere (actually, in the time it’s taken us to finish this post, most of them have dropped :-/) and once again the Matrix team has been hacking away too furiously to...

The Issue Python is a dynamic language. The main implementation CPython, is interpreted (actually, it is compiled into code interpreted by a Python virtual machine). The Python interpreter uses a Global Interpreter Lock (GIL) to protect its structures...

In last post, I have mentioned the tools which I used for profiling numpy. Call-graph, made my life not easier but a bit simpler to detect time consuming methods. But time taken just indicate the possibility of bottlenecks as many of time consuming methods...